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% Creation date: 2024-12-03
% Creation time: 18-07-19
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@Inproceedings { 2024_lohmoeller_scematch,
   title = {scE(match): Privacy-Preserving Cluster Matching of Single-Cell Data},
   year = {2024},
   month = {12},
   day = {16},
   abstract = {Advances in single-cell RNA sequencing (scRNA-seq) have dramatically enhanced our understanding of cellular functions and disease mechanisms. Despite its potential, scRNA-seq faces significant challenges related to data privacy, cost, and Intellectual Property (IP) protection, which hinder the sharing and collaborative use of these sensitive datasets. In this paper, we introduce a novel method, scE(match), a privacy-preserving tool that facilitates the matching of single-cell clusters between different datasets by relying on scmap as an established projection tool, but without compromising data privacy or IP. scE(match) utilizes homomorphic encryption to ensure that data and unique cell clusters remain confidential while enabling the identification of overlapping cell types for further collaboration and downstream analysis. Our evaluation shows that scE(match) performantly matches cell types across datasets with high precision, addressing both practical and ethical concerns in sharing scRNA-seq data. This approach not only supports secure data collaboration but also fosters advances in biomedical research by reliably protecting sensitive information and IP rights.},
   keywords = {confidentiality; scmap; privacy-preserving computations; offloading; healthcare},
   tags = {rfc;health},
   url = {https://www.comsys.rwth-aachen.de/fileadmin/papers/2024/2024-lohmoeller-scEmatch.pdf},
   publisher = {IEEE},
   booktitle = {Proceedings of the International Workshop on AI-Driven Trust, Security and Privacy in Computer Networks (AI-Driven TSP '24), co-located with the 23rd IEEE International Conference on Trust, Security and Privacy in Computing and Communications (TrustCom '24), December 17-21, 2024, Sanya, China},
   event_place = {Sanya, China},
   event_name = {TrustCom 2024},
   event_date = {December 17-21, 2024},
   state = {accepted},
   language = {en},
   reviewed = {1},
   author = {Lohm{\"o}ller, Johannes and Scheiber, Jannis and Kramann, Rafael and Wehrle, Klaus and Hayat, Sikander and Pennekamp, Jan}
}

@Article { 2024_querfurth_mcbert,
   title = {mcBERT: Patient-Level Single-cell Transcriptomics Data Representation},
   journal = {bioRxiv},
   year = {2024},
   month = {11},
   day = {7},
   tags = {health},
   DOI = {10.1101/2024.11.04.621897},
   author = {von Querfurth, Benedikt and Lohm{\"o}ller, Johannes and Pennekamp, Jan and Bleckwehl, Tore and Kramann, Rafael and Wehrle, Klaus and Hayat, Sikander}
}

@Inproceedings { 2024-wagner-madtls,
   title = {Madtls: Fine-grained Middlebox-aware End-to-end Security for Industrial Communication},
   year = {2024},
   month = {7},
   day = {1},
   url = {https://www.comsys.rwth-aachen.de/fileadmin/papers/2024/2024-wagner-madtls.pdf},
   publisher = {ACM},
   booktitle = {19th ACM ASIA Conference on Computer and Communications Security (ACM AsiaCCS '24), Singapur},
   event_place = {Singapur},
   event_name = {ACM ASIA Conference on Computer and Communications Security (AsiaCCS)},
   event_date = {July 1-5, 2024},
   DOI = {10.1145/3634737.3637640},
   reviewed = {1},
   author = {Wagner, Eric and Heye, David and Serror, Martin and Kunze, Ike and Wehrle, Klaus and Henze, Martin}
}

@Inproceedings { 2024-kunze-spintrap,
   title = {SpinTrap: Catching Speeding QUIC Flows},
   year = {2024},
   month = {5},
   day = {7},
   tags = {legato},
   url = {https://www.comsys.rwth-aachen.de/fileadmin/papers/2024/2024-kunze-spintrap.pdf},
   publisher = {IEEE/IFIP},
   booktitle = {Proceedings of the 2024 IEEE/IFIP Network Operations and Management Symposium (NOMS '24)},
   event_name = {2024 IEEE/IFIP Network Operations and Management Symposium},
   DOI = {10.1109/NOMS59830.2024.10575719},
   reviewed = {1},
   author = {Kunze, Ike and Sander, Constantin and Tissen, Lars and Bode, Benedikt and Wehrle, Klaus}
}

@Inproceedings { 2024-kunze-civic,
   title = {In-Situ Model Validation for Continuous Processes Using In-Network Computing},
   year = {2024},
   month = {5},
   tags = {internet-of-production},
   url = {https://www.comsys.rwth-aachen.de/fileadmin/papers/2024/2024-kunze-civic.pdf},
   publisher = {IEEE},
   booktitle = {Proceedings of the 7th IEEE International Conference on Industrial Cyber-Physical Systems (ICPS '24)},
   DOI = {10.1109/ICPS59941.2024.10639999},
   reviewed = {1},
   author = {Kunze, Ike and Scheurenberg, Dominik and Tirpitz, Liam and Geisler, Sandra and Wehrle, Klaus}
}

@Article { 2024_pennekamp_supply-chain-survey,
   title = {An Interdisciplinary Survey on Information Flows in Supply Chains},
   journal = {ACM Computing Surveys},
   year = {2024},
   month = {2},
   day = {1},
   volume = {56},
   number = {2},
   abstract = {Supply chains form the backbone of modern economies and therefore require reliable information flows. In practice, however, supply chains face severe technical challenges, especially regarding security and privacy. In this work, we consolidate studies from supply chain management, information systems, and computer science from 2010--2021 in an interdisciplinary meta-survey to make this topic holistically accessible to interdisciplinary research. In particular, we identify a significant potential for computer scientists to remedy technical challenges and improve the robustness of information flows. We subsequently present a concise information flow-focused taxonomy for supply chains before discussing future research directions to provide possible entry points.},
   keywords = {information flows; data communication; supply chain management; data security; data sharing; systematic literature review},
   tags = {internet-of-production},
   url = {https://www.comsys.rwth-aachen.de/fileadmin/papers/2024/2024-pennekamp-supply-chain-survey.pdf},
   publisher = {ACM},
   ISSN = {0360-0300},
   DOI = {10.1145/3606693},
   reviewed = {1},
   author = {Pennekamp, Jan and Matzutt, Roman and Klinkm{\"u}ller, Christopher and Bader, Lennart and Serror, Martin and Wagner, Eric and Malik, Sidra and Spi{\ss}, Maria and Rahn, Jessica and G{\"u}rpinar, Tan and Vlad, Eduard and Leemans, Sander J. J. and Kanhere, Salil S. and Stich, Volker and Wehrle, Klaus}
}