Health

Transformer-Based Integrative Patient Representations from Single-Cell RNA Data
Single-cell RNA sequencing (scRNA-Seq) is a powerful tool to explore cellular heterogeneity in healthy and diseased states, yet its …
Benedikt von Querfurth, Johannes Lohmöller, Jan Pennekamp, Tore Bleckwehl, Rafael Kramann, Klaus Wehrle, Sikander Hayat
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Complementing Organizational Security in Data Ecosystems with Technical Guarantees
Federated data ecosystems continue to emerge to connect previously isolated data silos across organizational boundaries over the …
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PASTA-4-PHT: A Pipeline for Automated Security and Technical Audits for the Personal Health Train
With the introduction of data protection regulations, the need for innovative privacy-preserving approaches to process and analyse …
Sascha Welten, Karl Kindermann, Ahmet Polat, Martin Görz, Maximilian Jugl, Laurenz Neumann, Alexander Neumann, Johannes Lohmöller, Jan Pennekamp, Stefan Decker
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scE(match): Privacy-Preserving Cluster Matching of Single-Cell Data
Advances in single-cell RNA sequencing (scRNA-seq) have dramatically enhanced our understanding of cellular functions and disease …
Johannes Lohmöller, Jannis Scheiber, Rafael Kramann, Klaus Wehrle, Sikander Hayat, Jan Pennekamp
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mcBERT: Patient-Level Single-cell Transcriptomics Data Representation
Benedikt von Querfurth, Johannes Lohmöller, Jan Pennekamp, Tore Bleckwehl, Rafael Kramann, Klaus Wehrle, Sikander Hayat
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Toward Technically Enforceable Consent in Healthcare Research
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The Unresolved Need for Dependable Guarantees on Security, Sovereignty, and Trust in Data Ecosystems
Data ecosystems emerged as a new paradigm to facilitate the automated and massive exchange of data from heterogeneous information …
Johannes Lohmöller, Jan Pennekamp, Roman Matzutt, Carolin Victoria Schneider, Eduard Vlad, Christian Trautwein, Klaus Wehrle
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BLOOM: BLoom filter based Oblivious Outsourced Matchings
Whole genome sequencing has become fast, accurate, and cheap, paving the way towards the large-scale collection and processing of human …
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